Data
Here, you can download the data used in the examples in the paper describing SCOT:
Simulated Datasets:
Domain 1 | Domain 2 | Notes | |
---|---|---|---|
Simulation 1: Bifurcating Tree | 300 x 1000 group labels | 300 x 2000group labels | Originally from here |
Simulation 2: Swiss Roll | 300 x 1000group labels | 300 x 2000group labels | Originally from here |
Simulation 3: Circular Frustum | 300 x 1000group labels | 300 x 2000group labels | Originally from here |
Simulation 4: Synthetic RNA-seq | 5000 x 50group labels | 5000 x 500group labels | Generated using Splatter |
Real-world Sequencing Datasets:
Note that the files in “Domain 1” and “Domain 2” columns of the real sequencing datasets contain data pre-processed according to their original publications (linked in Notes), so they are dimensionality reduced. To get access to the original raw datasets, follow the “Raw data” links.
Domain 1 | Domain 2 | Notes | |
---|---|---|---|
SNAREseq Cell Line Mixture | 1047 x 19 (chromatin accessibility) | 1047 x 10 (gene expression) | Original publication. Raw data |
scGEM Dataset | 177 x 34 (gene expression) | 177 x 27 (DNA methylation) | Original publication. Raw data |
sciOmics Dataset | 177 x 34 (gene expression) | 177 x 27 (chromatin accessibility) | Original publication. Raw data |